PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797735.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20481.6 Da    PI: 9.458
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.59.4e-101855441
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    ++k+  ++ +s  +n + K A  LS+LC++++a+iifs
  XP_009797735.1 18 KDKRAEKIALSHKQNALSKRAMDLSTLCGIDIAIIIFS 55
                    78889999*****************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0036166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.203767IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-5929IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-14980IPR002100Transcription factor, MADS-box
PfamPF003191.5E-81861IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-52944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MARMTSQMKS KSEKKILKDK RAEKIALSHK QNALSKRAMD LSTLCGIDIA IIIFSIAAEP  60
FFFGNPNVES VIERFSQAKQ PFNHMSSRKT THEKTGGGKE NDTMKKEERK AINEEEKGES  120
TLESFEPTTL VRLEKLKQEI DQLEKDLAEK IDELQSKIGV KDPKFVLEMN ATKCSIIYNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797735.11e-129PREDICTED: agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258